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I am a researcher and academic teacher at Silesian University of Technology, where I lead Data Science, Operating Systems and Team Design courses. My professional interests are Algorithms, Machine learning, Programming and Linux. As my PhD thesis I worked on methods for protein similarity analyses while after it I started working on protein function prediction. I have also industrial experience where I worked on access control systems, image processing, passenger information system, Wimbledon/ITF tournament systems and bridge network device development.

Academic career

  • 2007 – 2011: Technical certificate at Technical Collage no. 3 in Tychy
  • 2011 – 2015: Engineering degree at Silesian University of Technology
  • 2015 – 2017: Master degree at Silesian University of Technology
  • 2017 – 2023: PhD degree at Silesian University of Technology
  • 2021 – 2023: Research Assistant at Silesian University of Technology
  • 2023 – present: Assistant Professor at Silesian University of Technology

Publications

  • Tørresen, Ole K., et al. “Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases.” Nucleic acids research 47.21 (2019): 10994-11006.
  • Jarnot, Patryk, et al. “PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.” Nucleic acids research 48.W1 (2020): W77-W84.
  • Kubáň, Vojtěch, et al. “Quantitative conformational analysis of functionally important electrostatic interactions in the intrinsically disordered region of delta subunit of bacterial RNA polymerase.” Journal of the American Chemical Society 141.42 (2019): 16817-16828.
  • Gruca, Aleksandra, et al. “Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development.” BMC bioinformatics 22 (2021): 1-18.
  • Jarnot, Patryk, et al. “Insights from analyses of low complexity regions with canonical methods for protein sequence comparison.” Briefings in Bioinformatics 23.5 (2022): bbac299.
  • Jarnot, Patryk, et al. “LCR-BLAST—a new modification of BLAST to search for similar low complexity regions in protein sequences.” Man-Machine Interactions 6: 6th International Conference on Man-Machine Interactions, ICMMI 2019, Cracow, Poland, October 2-3, 2019. Springer International Publishing, 2020.
  • Calvier, François-Élie, et al. “Providing Molecular Characterization for Unexplained Adverse Drug Reactions.” (2019).